Talks about Science and Research

Watch best presentations on challenges, solutions, trends and outlook in Science and Research.

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Contributed Talks 6

07/31/2020
Views 136
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accuracy and precision, anaerobic organism, benchmark, bioc2020, case study, cluster analysis, clustering, computational biology, cross-validation (statistics), data analysis, differential expression, dimension reduction, exon, gene, gene expression, gene expression profiling, imputation (statistics), intron, microbiome, normalization, p-value, preprocessing, primary transcript, principal component analysis, research, rna-seq, rnaseq, sequencing, simulation, single cell, sparse matrix, statistics, trajectory inference, uniform distribution (continuous), usability
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Aaron Lun, Making the infrastructure sausage tales of Bioconductor package development

07/31/2020
Views 415
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bioc2020, cartesian coordinate system, class (computer programming), command-line interface, computer data storage, computer file, computer programming, graphical widget, hard disk drive, inheritance (object-oriented programming), input/output, integral, interpreter (computing), matrix multiplication, method overriding, mobile app, object (computer science), principal component analysis, projection matrix, random-access memory, regression analysis, reliability engineering, rotation matrix, sparse matrix, subroutine, visualization (graphics)
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Lightning Talks Session #1

07/31/2020
Views 58
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argument, bioc2020, chromosome conformation capture, command-line interface, computational phylogenetics, computing, data analysis, database, dna-binding protein, evaluation, expected value, feeling, function (mathematics), lazy evaluation, parsing, phylogenetic tree, reason, scripting language, shell (computing), species, system, usability, use case, utility, web development, world wide web
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Lori Shepherd, Hervé Pagès: Talk With The Bioc Core Team

07/31/2020
Views 65
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best practice, bioc2020, bios, code coverage, community, distributed version control, function (mathematics), github, google docs, internet forum, javascript, language, learning, matrix (mathematics), mind, namespace, pdf, programmer, rapport, software bug, software release life cycle, the matrix, thought, time management, unit testing, web design
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Kelly Street, Workshop 500: Trajectory inference across conditions: differential expression

07/31/2020
Views 840
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bioc2020, cellular differentiation, concept, degrees of freedom (statistics), differential expression, differential progression, epithelial–mesenchymal transition, function (mathematics), gene expression, integral, language, logarithm, mean, mesenchyme, multimodal distribution, non-alcoholic fatty liver disease, parameter, principal component analysis, self, single cell, smoothing spline, spline (mathematics), statistics, time, topology, trajectory inference, variance
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Contributed Talks 5

07/31/2020
Views 66
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bacterial vaginosis, bioc2020, cloud computing, command-line interface, computer file, continuous integration, deployment environment, differential methylation, dna methylation, dna sequencing, docker, epigenetics, experiment data, experiment hub, genomic imprinting, github, gui, homo sapiens data, human microbiome, human microbiome project, integrated development environment, metadata, microbiome data, microbiota, nanopore, oxford nanopore technologies, pipeline (computing), preterm birth, reproducibility, reproducible research, sensor, sequencing data, sexually transmitted infection, software, software , supercomputer, visualization, visualization (graphics), women's health, workflows, x-inactivation
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Caroline Uhler, Multi Domain Data Integration From Observations to Mechanistic Insights

07/31/2020
Views 374
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autoencoder, bioc2020, cell (biology), cellular differentiation, computer vision, coronavirus disease 2019, design of experiments, experiment, gene expression, gene knockdown, greedy algorithm, kinase, machine learning, principal component analysis, protein, protein kinase, receiver operating characteristic, receptor (biochemistry), science, sense, severe acute respiratory syndrome coronavirus 2, statistical classification, statistics, time, understanding, virus
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Michael Love, Workshop 200: Importing Alevin Scrna Seq Counts Into R Bioconductor

07/30/2020
Views 317
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assay, barcode, bioc2020, bootstrapping (statistics), bracket, data import, experiment, function (mathematics), gencode, gene, gene expression, knowledge, lag, likelihood function, maximum likelihood estimation, metadata, mind, parsing, primary transcript, principal component analysis, protein isoform, pseudogene, quantifier (logic), quantity, scrna-seq, sense, single cell, symbol, transcriptome, variance, visualization
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Birds of a Feather On Standards for Accessible and Interpretable Visualizations Follow up

07/30/2020
Views 37
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accessibility, bias, bioc2020, cielab color space, color, color blindness, color difference, color space, color vision, crowdsourcing, data visualization, distance, google docs, graphics, map, palette (computing), reason, research, rgb color model, usability, user experience, visual acuity, visual impairment, visual perception, wikipedia, world wide web
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Contributed Talks 4

07/30/2020
Views 85
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accuracy and precision, bioc2020, bioinformatics, biomedical informatics, cancer data, classification, clinical trial, cloud computing, cluster analysis, dash bio, data, data integration, epigenetics, feature extraction, feature selection, genetics, homo sapiens data, html, imputation (statistics), kubernetes, machine learning, medical imaging, metabolomics, metadata, missing data, multi-omics, multiomics, network, pathway analysis, pcarmacogenomics, prediction, principal component, principal component analysis, proteomics, regression analysis, rnaseq, sensitivity and specificity, software , statistical classification, support vector machine, systems biology, training, validation, and test sets, web browser, world wide web
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X. Shirley Liu, Computational modeling of protein degradation in tumors

07/30/2020
Views 242
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adolescence, bioc2020, brca1, breast cancer, cancer, cell signaling, cyclin, cytokine, dna, epigenetics, estrogen, estrogen receptor, gene, gene expression, human genome, immune system, macrophage, mutation, p53, receptor (biochemistry), regulator gene, transcription factor, tumor microenvironment, ubiquitin, ubiquitin ligase
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Lightning Talks, Session #2

07/30/2020
Views 96
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api, average, bioc2020, bioinformatics, cancer, chromatin, chromosome, client (computing), command-line interface, deconvolution, gencode, gene regulatory network, genetics, github, likelihood function, mixture model, motivation, normal distribution, oncogenomics, server (computing), software, statistical model, statistics, time, uniform distribution (continuous), world wide web
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Talk with the BioC Core Team

07/30/2020
Views 46
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allergy, apache subversion, bioc2020, first-class cricket, fraction, hdmi, home page, html, internet, jury, light-emitting diode, linux, macintosh, man page, martingale (probability theory), mathematics, microsoft windows, package manager, pothos (plant), question, sanitation, software repository, trimethoprim/sulfamethoxazole, unix
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Kayla Interdonato, Workshop 500: Material on how to create and submit a package to Bioconductor

07/30/2020
Views 116
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bioc2020, bioconductor, bioinformatics, computer, computer file, computer programming, cwl, debugging, directory (computing), documentation, executable, github, internet forum, interoperability, man page, namespace, public-key cryptography, r (programming language), reproducible research, software, software bug, software repository, text file, thought, understanding, unit testing, version control, visualization, wisdom, workflow, world wide web
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Mikhail Dozmorov, Workshop 500: Differentially interacting chromatin regions from multiple Hi-C data

07/30/2020
Views 119
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big data, binomial distribution, bioc2020, cancer, cartesian coordinate system, chromatin conformation capture, chromosome conformation capture, computer file, ctcf, datasheet, deception, differential expression, dna methylation, dna sequencing, file transfer protocol, gene expression, hi-c, hiccompare, karyotype, map, matrix (mathematics), multihiccompare, normal distribution, parameter, password, principal component analysis, promoter (genetics), protein–protein interaction, sampling (statistics), software framework, symmetric matrix
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Sehyun Oh, Levi Waldron, Workshop 100: Cloud based genomics using Terra AnVIL

07/30/2020
Views 80
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android (operating system), bioc2020, biology, biostatistics, brand, budget, classroom, cloud computing, computer programming, computing, concept, data model, file format, github, history, json, learning curve, pipeline (computing), research, risk, software, start menu, statistics, theory, use case, workspace
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Peter Hickey, Workshop 500: The DelayedArray Framework to Support the Analysis of Large Datasets

07/30/2020
Views 101
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abstraction, audio video interleave, big data, bioc2020, bios, bit, c++, function (mathematics), gene expression, hard disk drive, hierarchical data format, logarithm, matrix (mathematics), matrix multiplication, metadata, object (computer science), on-disk data, parameter, peripheral component interconnect, principal component analysis, random-access memory, reading, reason, scrna-seq, single cell, software, sparse matrix, statistics, subroutine, transpose
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Qian Liu, Workshop 500: Bioconductor toolchain for development of reproducible pipelines in CWL

07/29/2020
Views 103
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bioc2020, command-line interface, computer file, computing, constructor (object-oriented programming), dna sequencing, galaxy (computational biology), genomics, illumina, inc., interface (computing), interoperability, machine learning, mobile app, operating system, parameter (computer programming), pdf, personal computer, pipeline (software), scalability, scientific workflow system, software, statistics, subroutine, usability, visualization (graphics)
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Petr Smirnov et al., A workshop on discovering biomarkers from high throughput response screens

07/29/2020
Views 107
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bioc2020, chemotherapy, data type, digital object identifier, ec50, equation, gene expression, ic50, identifier, in vitro, integral, ionizing radiation, lexus gx, logistic regression, mechanism of action, medication, metadata, mutator method, neoplasm, p-value, parameter, pdx, pharmacogenomics, phenotypic screen, radiation therapy, radiotherapy, sensitivity and specificity, statistics, subroutine
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Contributed Talks 3

07/29/2020
Views 68
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annotation, attention, bioc2020, cell based analysis, cluster analysis, clustering, color, database, distance, fish, food, gene, gene expression, histology, laptop, manifold, mathematics, metadata, multicellular organism, rna-seq, sense, sequencing, simulation, single cell, single cell sequencing, social research, spatial, spatial analysis, spatial software, statistics, time, toy, transcriptomics, transcriptomics technologies, truth
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Fei Chen, Slide seq a platform for understanding cellular circuits in tissue

07/29/2020
Views 1.01 K
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bioc2020, biology, brain, cancer, cell biology, cellular differentiation, cerebellum, developmental biology, dna sequencing, ecology, expansion microscopy, gene expression profiling, genomics, lens (anatomy), microglia, microscope, microscopy, mind, molecular biology, neoplasm, pathology, purkinje cell, retina, single cell sequencing, spatial analysis, statistics
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Aedin Culhane, Workshop 200: An introduction to matrix factorization & principal component analysis

07/29/2020
Views 272
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bioc2020, cartesian coordinate system, covariance matrix, data analysis, degrees of freedom (statistics), diagonal matrix, dimensionality reduction, eigenvalues and eigenvectors, euclidean vector, factor analysis, factorization, invertible matrix, linear regression, matrix (mathematics), moment of inertia, orthogonal matrix, principal component analysis, rank (linear algebra), rna-seq, singular value decomposition, statistics, transpose, trigonometric functions, trigonometry, unit circle, vector space
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Marcel Ramos, Workshop 200: MultiAssayExperiment and curatedTCGAData Bioconductor 2020 workshop

07/29/2020
Views 188
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ada (programming language), annotation, api, autocomplete, bioc2020, bit, brca mutation, constructor (object-oriented programming), correlation and dependence, experiment, function (mathematics), google chrome, information, learning, library, map, matrix (mathematics), measurement, metadata, ring (mathematics), spin (physics), subroutine, the cancer genome atlas, usability, web portal
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Birds of a Feather CDSB community efforts to strengthen the R Bioconductor community in Mexico/LatAm

07/29/2020
Views 92
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bank, best practice, bioc2020, bluetooth, cbs, classroom, concept, database, dna, dna sequencing, education, english language, function (mathematics), gene, genome, mentorship, metadata, promoter (genetics), reality, science, spanish language, sql, teaching assistant, transcription factor, translation, twitter
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Corrie Painter, Count Me In, Partnering with patients to accelerate the pace of cancer research

07/29/2020
Views 90
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autoimmune disease, belief, bioc2020, bioconductor , bioinformatics, biopsy, checkpoint inhibitor, conference, consent, coronavirus disease 2019, dana–farber cancer institute, data science, education, exome, exome sequencing, health care, immunotherapy, laboratory, medical privacy, medical record, melanoma, metastasis, metastatic breast cancer, neoplasm, p110α, pembrolizumab, sarcoma, social media, stomach cancer, terminal illness, training, virtual conference, web portal
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Meet and Talk with the BioC Community Advisory Board and BioC Awards Ceremony

07/29/2020
Views 68
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apple inc., attention, bioc2020, blog, board of directors, campinas, data analysis, gender, geography, github, mentorship, motivation, music, open access, pedagogy, postdoctoral researcher, python (programming language), research, slack (software), social media, software, translation, twitter, university of campinas, usability, witchcraft
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Kai Hu, Julie Zhu, Haibo Liu, Jianhong Ou, Workshop 200: Integrated ChIP seq data analysis

07/28/2020
Views 140
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bioc2020, chromatin, chromatin immunoprecipitation, computer file, cut, copy, and paste, dna, encode, epistasis, experiment, file format, file system, gene, gene duplication, gene expression, genome, immunoprecipitation, ligand (biochemistry), metadata, mutation, neoplasm, phenotype, promoter (genetics), protein, rna, rna polymerase, transcription factor
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Julie Zhu, Jianhong Ou, Workshop 200: CRISPRseek for design gRNAs for the CRISPR genome edit system

07/28/2020
Views 182
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adoption, atom, bacteria, bioc2020, cast iron, cell nucleus, crispr, dna, dna sequencing, email, evaluation, function (mathematics), gene, infection, learning, library, machine, machine learning, position weight matrix, species, supply-side economics, transcription (biology), truth, virus
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Contributed Talks 2

07/28/2020
Views 143
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bayesian inference, bioc2020, bioinformatics, cellular differentiation, color blindness, correlation and dependence, derivative, dimensionality reduction, equation, gene expression profiling, generalized linear model, gradient, likelihood function, logarithm, mathematical optimization, mathematics, matrix (mathematics), olfaction, principal component analysis, regression analysis, rna-seq, sequence alignment, singular value decomposition, smoothing spline, spatial analysis, statistics
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Kylie Bemis, Out of memory computing with matter

07/28/2020
Views 76
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3d reconstruction, binary file, bioc2020, bioconductor , bioinformatics, c (programming language), c++, computer file, conference, data science, data type, education, file format, hierarchical data format, lipidomics, mass spectrometry, mass spectrometry imaging, matrix (mathematics), metabolomics, metadata, number, pointer (computer programming), principal component analysis, program optimization, proteomics, r (programming language), regression analysis, sequence, sparse matrix, spectrum, structure, training, virtual conference
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