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Talks about Science and Research

Watch best presentations on challenges, solutions, trends and outlook in Science and Research.

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Contributed Talks 6

07/31/2020
Views 145
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benchmark, case study, clustering, data analysis, research, simulation, statistics, usability, accuracy and precision, cluster analysis, computational biology, cross-validation (statistics), exon, gene, gene expression, gene expression profiling, imputation (statistics), intron, p-value, principal component analysis, sequencing, sparse matrix, uniform distribution (continuous), rna-seq, microbiome, bioc2020, single cell, differential expression, rnaseq, trajectory inference, dimension reduction, normalization, preprocessing, primary transcript, anaerobic organism
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Aaron Lun, Making the infrastructure sausage tales of Bioconductor package development

07/31/2020
Views 454
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computer programming, mobile app, cartesian coordinate system, class (computer programming), command-line interface, computer data storage, computer file, graphical widget, hard disk drive, inheritance (object-oriented programming), input/output, integral, interpreter (computing), matrix multiplication, object (computer science), principal component analysis, random-access memory, regression analysis, reliability engineering, sparse matrix, subroutine, visualization (graphics), method overriding, rotation matrix, bioc2020, projection matrix
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Lightning Talks Session #1

07/31/2020
Views 62
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computing, data analysis, database, feeling, reason, system, usability, utility, web development, argument, command-line interface, evaluation, expected value, function (mathematics), lazy evaluation, parsing, phylogenetic tree, scripting language, shell (computing), species, use case, world wide web, computational phylogenetics, bioc2020, chromosome conformation capture, dna-binding protein
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Lori Shepherd, Hervé Pagès: Talk With The Bioc Core Team

07/31/2020
Views 66
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best practice, community, github, javascript, language, learning, mind, pdf, programmer, unit testing, web design, bios, code coverage, distributed version control, function (mathematics), google docs, internet forum, matrix (mathematics), namespace, rapport, software bug, software release life cycle, the matrix, thought, time management, bioc2020
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Kelly Street, Workshop 500: Trajectory inference across conditions: differential expression

07/31/2020
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concept, language, statistics, time, cellular differentiation, degrees of freedom (statistics), function (mathematics), gene expression, integral, logarithm, mean, non-alcoholic fatty liver disease, parameter, principal component analysis, self, topology, variance, multimodal distribution, bioc2020, single cell, differential expression, differential progression, trajectory inference, smoothing spline, epithelial–mesenchymal transition, mesenchyme, spline (mathematics)
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Contributed Talks 5

07/31/2020
Views 75
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cloud computing, continuous integration, docker, github, gui, metadata, reproducibility, software , visualization, command-line interface, computer file, dna methylation, dna sequencing, deployment environment, epigenetics, human microbiome, integrated development environment, microbiota, oxford nanopore technologies, pipeline (computing), sensor, sexually transmitted infection, supercomputer, visualization (graphics), women's health, preterm birth, reproducible research, human microbiome project, nanopore, bioc2020, homo sapiens data, differential methylation, experiment data, experiment hub, microbiome data, sequencing data, workflows, bacterial vaginosis, genomic imprinting, x-inactivation
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Caroline Uhler, Multi Domain Data Integration From Observations to Mechanistic Insights

07/31/2020
Views 408
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computer vision, experiment, machine learning, protein, science, statistics, time, autoencoder, cell (biology), cellular differentiation, coronavirus disease 2019, gene expression, principal component analysis, receiver operating characteristic, receptor (biochemistry), sense, severe acute respiratory syndrome coronavirus 2, statistical classification, understanding, virus, design of experiments, greedy algorithm, bioc2020, gene knockdown, kinase, protein kinase
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Michael Love, Workshop 200: Importing Alevin Scrna Seq Counts Into R Bioconductor

07/30/2020
Views 352
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experiment, knowledge, metadata, mind, visualization, assay, barcode, bootstrapping (statistics), bracket, function (mathematics), gene, gene expression, lag, likelihood function, maximum likelihood estimation, parsing, principal component analysis, quantifier (logic), quantity, sense, symbol, variance, bioc2020, single cell, scrna-seq, data import, gencode, primary transcript, protein isoform, pseudogene, transcriptome
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Birds of a Feather On Standards for Accessible and Interpretable Visualizations Follow up

07/30/2020
Views 39
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accessibility, bias, color, data visualization , graphics, reason, research, usability, user experience, color blindness, color space, color vision, crowdsourcing, distance, google docs, map, palette (computing), rgb color model, visual acuity, visual impairment, visual perception, wikipedia, world wide web, color difference, cielab color space, bioc2020
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Contributed Talks 4

07/30/2020
Views 88
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bioinformatics, classification, clinical trial, cloud computing, data, data integration, genetics, html, kubernetes , machine learning, metadata, network, prediction, software , accuracy and precision, cluster analysis, epigenetics, feature extraction, feature selection, imputation (statistics), medical imaging, metabolomics, missing data, principal component analysis, proteomics, regression analysis, sensitivity and specificity, statistical classification, systems biology, training, validation, and test sets, web browser, world wide web, support vector machine, pathway analysis, bioc2020, biomedical informatics, cancer data, dash bio, homo sapiens data, multi-omics, pcarmacogenomics, principal component, rnaseq, multiomics
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X. Shirley Liu, Computational modeling of protein degradation in tumors

07/30/2020
Views 270
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breast cancer, immune system, adolescence, cancer, cytokine, dna, epigenetics, estrogen, gene, human genome, macrophage, mutation, receptor (biochemistry), tumor microenvironment, cell signaling, estrogen receptor, transcription factor, brca1, cyclin, p53, regulator gene, ubiquitin, ubiquitin ligase
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Lightning Talks, Session #2

07/30/2020
Views 99
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api, bioinformatics, genetics, github, motivation, software , statistics, time, average, cancer, chromosome, client (computing), command-line interface, likelihood function, mixture model, normal distribution, server (computing), statistical model, world wide web, uniform distribution (continuous), deconvolution, chromatin, bioc2020, gencode, gene regulatory network, oncogenomics
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Talk with the BioC Core Team

07/30/2020
Views 51
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html, internet, linux, mathematics, question, unix, allergy, apache subversion, hdmi, home page, jury, light-emitting diode, macintosh, man page, microsoft windows, package manager, sanitation, software repository, fraction, bioc2020, first-class cricket, martingale (probability theory), pothos (plant), trimethoprim/sulfamethoxazole
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Kayla Interdonato, Workshop 500: Material on how to create and submit a package to Bioconductor

07/30/2020
Views 147
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computer, computer programming, debugging, documentation, github, interoperability, unit testing, version control, visualization, workflow, computer file, directory (computing), executable, internet forum, man page, namespace, public-key cryptography, software bug, software repository, text file, thought, understanding, wisdom, world wide web, r (programming language), reproducible research, cwl
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Mikhail Dozmorov, Workshop 500: Differentially interacting chromatin regions from multiple Hi-C data

07/30/2020
Views 130
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big data, binomial distribution, cancer, cartesian coordinate system, computer file, dna methylation, dna sequencing, deception, file transfer protocol, gene expression, karyotype, map, matrix (mathematics), normal distribution, parameter, password, principal component analysis, promoter (genetics), protein–protein interaction, sampling (statistics), software framework, symmetric matrix, datasheet, bioc2020, chromatin conformation capture, differential expression, hi-c, hiccompare, multihiccompare, ctcf, chromosome conformation capture
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Sehyun Oh, Levi Waldron, Workshop 100: Cloud based genomics using Terra AnVIL

07/30/2020
Views 81
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brand, budget, computer programming, computing, github, history, json, risk, android (operating system), classroom, data model, learning curve, pipeline (computing), start menu, theory, use case, workspace
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Peter Hickey, Workshop 500: The DelayedArray Framework to Support the Analysis of Large Datasets

07/30/2020
Views 117
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big data, c++, reason, software , statistics, abstraction, audio video interleave, bios, gene expression, hard disk drive, hierarchical data format, logarithm, matrix multiplication, object (computer science), parameter, principal component analysis, random-access memory, reading, sparse matrix, transpose, peripheral component interconnect, single cell, on-disk data, scrna-seq
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Qian Liu, Workshop 500: Bioconductor toolchain for development of reproducible pipelines in CWL

07/29/2020
Views 114
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computing, interoperability, machine learning, mobile app, operating system, pdf, scalability, command-line interface, computer file, constructor (object-oriented programming), dna sequencing, genomics, interface (computing), parameter (computer programming), personal computer, pipeline (software), visualization (graphics), galaxy (computational biology), illumina, inc., scientific workflow system
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Petr Smirnov et al., A workshop on discovering biomarkers from high throughput response screens

07/29/2020
Views 114
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metadata, statistics, chemotherapy, data type, equation, gene expression, identifier, in vitro, integral, logistic regression, mechanism of action, medication, mutator method, neoplasm, p-value, parameter, pharmacogenomics, radiation therapy, sensitivity and specificity, subroutine, ionizing radiation, bioc2020, pdx, phenotypic screen, radiotherapy, digital object identifier, ec50, ic50, lexus gx
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Contributed Talks 3

07/29/2020
Views 77
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clustering, color, database, food, manifold, mathematics, metadata, simulation, spatial, spatial analysis, statistics, time, attention, cluster analysis, distance, fish, gene, gene expression, laptop, sense, sequencing, social research, toy, truth, annotation, single cell sequencing, rna-seq, transcriptomics technologies, bioc2020, cell based analysis, single cell, spatial software, transcriptomics, histology, multicellular organism
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Fei Chen, Slide seq a platform for understanding cellular circuits in tissue

07/29/2020
Views 1.15 K
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brain, spatial analysis, cell biology, cellular differentiation, cerebellum, gene expression profiling, microglia, microscope, microscopy, molecular biology, neoplasm, pathology, retina, lens (anatomy), single cell sequencing, developmental biology, expansion microscopy, purkinje cell
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Aedin Culhane, Workshop 200: An introduction to matrix factorization & principal component analysis

07/29/2020
Views 309
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trigonometry, cartesian coordinate system, degrees of freedom (statistics), euclidean vector, factor analysis, factorization, linear regression, singular value decomposition, transpose, trigonometric functions, vector space, eigenvalues and eigenvectors, covariance matrix, diagonal matrix, invertible matrix, orthogonal matrix, rank (linear algebra), rna-seq, moment of inertia, unit circle
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Marcel Ramos, Workshop 200: MultiAssayExperiment and curatedTCGAData Bioconductor 2020 workshop

07/29/2020
Views 211
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api, experiment, google chrome, information, learning, library, measurement, metadata, usability, ada (programming language), autocomplete, bit, constructor (object-oriented programming), correlation and dependence, function (mathematics), map, matrix (mathematics), ring (mathematics), spin (physics), subroutine, annotation, brca mutation, the cancer genome atlas
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Birds of a Feather CDSB community efforts to strengthen the R Bioconductor community in Mexico/LatAm

07/29/2020
Views 94
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best practice, bluetooth, cbs, concept, database, education, genome, mentorship, metadata, reality, science, sql, twitter, bank, classroom, dna, dna sequencing, english language, function (mathematics), gene, promoter (genetics), spanish language, teaching assistant, translation, bioc2020, transcription factor
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Corrie Painter, Count Me In, Partnering with patients to accelerate the pace of cancer research

07/29/2020
Views 104
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bioinformatics, conference, consent, data science, education, health care, metastasis, social media, training, virtual conference, autoimmune disease, belief, biopsy, coronavirus disease 2019, exome, exome sequencing, immunotherapy, laboratory, medical privacy, medical record, melanoma, metastatic breast cancer, neoplasm, terminal illness, web portal, bioconductor, checkpoint inhibitor, bioc2020, dana–farber cancer institute, p110α, pembrolizumab, sarcoma, stomach cancer
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Meet and Talk with the BioC Community Advisory Board and BioC Awards Ceremony

07/29/2020
Views 97
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data analysis, gender, github, mentorship, motivation, music, open access, research, social media, software , twitter, usability, apple inc., attention, blog, board of directors, geography, pedagogy, postdoctoral researcher, python (programming language), slack (software), translation, witchcraft, bioc2020, campinas, university of campinas
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Kai Hu, Julie Zhu, Haibo Liu, Jianhong Ou, Workshop 200: Integrated ChIP seq data analysis

07/28/2020
Views 150
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experiment, genome, metadata, protein, computer file, cut, copy, and paste, dna, file format, file system, gene, gene expression, ligand (biochemistry), mutation, neoplasm, phenotype, promoter (genetics), rna, rna polymerase, encode, chromatin, bioc2020, gene duplication, chromatin immunoprecipitation, epistasis, immunoprecipitation, transcription factor
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Julie Zhu, Jianhong Ou, Workshop 200: CRISPRseek for design gRNAs for the CRISPR genome edit system

07/28/2020
Views 195
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adoption, crispr, email, learning, library, machine, machine learning, atom, bacteria, cell nucleus, dna, dna sequencing, evaluation, function (mathematics), gene, infection, species, supply-side economics, transcription (biology), truth, virus, bioc2020, cast iron, position weight matrix
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Contributed Talks 2

07/28/2020
Views 151
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bioinformatics, mathematics, spatial analysis, statistics, bayesian inference, cellular differentiation, color blindness, correlation and dependence, derivative, dimensionality reduction, equation, gene expression profiling, generalized linear model, gradient, likelihood function, logarithm, mathematical optimization, matrix (mathematics), olfaction, principal component analysis, regression analysis, singular value decomposition, sequence alignment, rna-seq, bioc2020, smoothing spline
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Kylie Bemis, Out of memory computing with matter

07/28/2020
Views 83
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c++, structure, 3d reconstruction, binary file, c (programming language), data type, file format, hierarchical data format, mass spectrometry, metabolomics, pointer (computer programming), program optimization, proteomics, regression analysis, sequence, sparse matrix, spectrum, r (programming language), mass spectrometry imaging, lipidomics
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